Kenneth Jones, PhD

FGF signaling directs myotube guidance by regulating Rac activity. 2020

Development. 2020 Feb 7;147(3). doi: 10.1242/dev.183624. PubMed PMID: 31932350; PubMed Central PMCID: PMC7033734.

Enhancing Hematopoiesis from Murine Embryonic Stem Cells through MLL1-Induced Activation of a Rac/Rho/Integrin Signaling Axis. 2020

Stem Cell Reports. 2020 Feb 11;14(2):285-299. doi: 10.1016/j.stemcr.2019.12.009. Epub 2020 Jan 16. PubMed PMID: 31951812; PubMed Central PMCID: PMC7013201.

PARP inhibition enhances radiotherapy of SMAD4 deficient human head and neck squamous cell carcinomas in experimental models. 2020

Clin Cancer Res. 2020 Mar 5;. doi: 10.1158/1078-0432.CCR-19-0514. [Epub ahead of print] PubMed PMID: 32139402.

Distinct pathways affected by menin versus MLL1/MLL2 in MLL-rearranged acute myeloid leukemia. 2019

Exp Hematol. 2019 Jan;69:37-42. doi: 10.1016/j.exphem.2018.10.001. Epub 2018 Oct 10. PubMed PMID: 30315824; PubMed Central PMCID: PMC6472707.

Transient Expression of GATA3 in Hematopoietic Stem Cells Facilitates Helper Innate Lymphoid Cell Differentiation. 2019

Front Immunol. 2019;10:510. doi: 10.3389/fimmu.2019.00510. eCollection 2019. PubMed PMID: 30949172; PubMed Central PMCID: PMC6438154.

Increased galactose expression and enhanced clearance in patients with low von Willebrand factor. 2019

Blood. 2019 Apr 4;133(14):1585-1596. doi: 10.1182/blood-2018-09-874636. Epub 2019 Feb 15. PubMed PMID: 30770394.

Compromised global embryonic transcriptome associated with advanced maternal age. 2019

J Assist Reprod Genet. 2019 Apr 25;. doi: 10.1007/s10815-019-01438-5. [Epub ahead of print] PubMed PMID: 31025158.

The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution. 2019

Development. 2019 Jun 17;146(12). doi: 10.1242/dev.174888. PubMed PMID: 31118233; PubMed Central PMCID: PMC6602358.

Gamma Interferon Alters Junctional Integrity via Rho Kinase, Resulting in Blood-Brain Barrier Leakage in Experimental Viral Encephalitis. 2019

mBio. 2019 Aug 6;10(4). doi: 10.1128/mBio.01675-19. PubMed PMID: 31387911; PubMed Central PMCID: PMC6686045.

TNF-a-driven inflammation and mitochondrial dysfunction define the platelet hyperreactivity of aging. 2019

Blood. 2019 Aug 29;134(9):727-740. doi: 10.1182/blood.2019000200. Epub 2019 Jul 16. PubMed PMID: 31311815; PubMe

Sequential analysis of myocardial gene expression with phenotypic change: Use of cross-platform concordance to strengthen biologic relevance. 2019

PLoS One. 2019;14(8):e0221519. doi: 10.1371/journal.pone.0221519. eCollection 2019. PubMed PMID: 31469842; PubMed Central PMCID: PMC6716635.

4th. Transcriptional profiling of murine retinas undergoing semi-synchronous cone photoreceptor differentiation. 2019

Dev Biol. 2019 Sep 15;453(2):155-167. doi: 10.1016/j.ydbio.2019.05.016. Epub 2019 Jun 1. PubMed PMID: 31163126; NIHMSID:NIHMS1552984.

Regular exercise potentiates energetically expensive hepatic de novo lipogenesis during early weight regain. 2019

Am J Physiol Regul Integr Comp Physiol. 2019 Nov 1;317(5):R684-R695. doi: 10.1152/ajpregu.00074.2019. Epub 2019 Sep 25. PubMed PMID: 31553623; PubMed Central PMCID: PMC6879845.

Establishment of patient-derived orthotopic xenograft model of 1q+ posterior fossa group A ependymoma. 2019

Neuro Oncol. 2019 Dec 17;21(12):1540-1551. doi: 10.1093/neuonc/noz116. PubMed PMID: 31276586; PubMed Central PMCID: PMC6917412.

Histamine H2 Receptor Polymorphisms, Myocardial Transcripts, and Heart Failure (from the Multi-Ethnic Study of Atherosclerosis and Beta-Blocker Effect on Remodeling and Gene Expression Trial). 2018

Am J Cardiol. 2018 Jan 15;121(2):256-261. doi: 10.1016/j.amjcard.2017.10.016. Epub 2017 Oct 20. PubMed PMID: 29191567; PubMed Central PMCID: PMC5742297.

AP-2a and AP-2ß cooperatively orchestrate homeobox gene expression during branchial arch patterning. 2018

Development. 2018 Jan 25;145(2). doi: 10.1242/dev.157438. PubMed PMID: 29229773; PubMed Central PMCID: PMC5825845.

High-efficiency RNA-based reprogramming of human primary fibroblasts. 2018

Nat Commun. 2018 Feb 21;9(1):745. doi: 10.1038/s41467-018-03190-3. PubMed PMID: 29467427; PubMed Central PMCID: PMC5821705.

MLL1 Promotes IL-7 Responsiveness and Survival during B Cell Differentiation. 2018

J Immunol. 2018 Mar 1;200(5):1682-1691. doi: 10.4049/jimmunol.1701572. Epub 2018 Jan 19. PubMed PMID: 29351999; PubMed Central PMCID: PMC5909838.

Repigmentation of Human Vitiligo Skin by NBUVB Is Controlled by Transcription of GLI1 and Activation of the ß-Catenin Pathway in the Hair Follicle Bulge Stem Cells. 2018

J Invest Dermatol. 2018 Mar;138(3):657-668. doi: 10.1016/j.jid.2017.09.040. Epub 2017 Oct 17. PubMed PMID: 29054607; PubMed Central PMCID: PMC6135256.

Development of new preclinical models to advance adrenocortical carcinoma research. 2018

Endocr Relat Cancer. 2018 Apr;25(4):437-451. doi: 10.1530/ERC-17-0447. Epub 2018 Jan 25. PubMed PMID: 29371329; PubMed Central PMCID: PMC5831504.

Filamin C Truncation Mutations Are Associated With Arrhythmogenic Dilated Cardiomyopathy and Changes in the Cell-Cell Adhesion Structures. 2018

JACC Clin Electrophysiol. 2018 Apr;4(4):504-514. doi: 10.1016/j.jacep.2017.12.003. Epub 2018 Feb 2. Pub

Specific expression of PD-L1 in RELA-fusion supratentorial ependymoma: Implications for PD-1-targeted therapy. 2018

Pediatr Blood Cancer. 2018 May;65(5):e26960. doi: 10.1002/pbc.26960. Epub 2018 Jan 19. PubMed PMID: 29350470; PubMed Central PMCID: PMC5867234.

Systemic hyperfibrinolysis after trauma: a pilot study of targeted proteomic analysis of superposed mechanisms in patient plasma. 2018

J Trauma Acute Care Surg. 2018 Jun;84(6):929-938. doi: 10.1097/TA.0000000000001878. PubMed PMID: 29554044; PubMed Central PMCID: PMC5970039.

Increased FGF8 signaling promotes chondrogenic rather than osteogenic development in the embryonic skull. 2018

Dis Model Mech. 2018 Jun 15;11(6). doi: 10.1242/dmm.031526. PubMed PMID: 29752281; PubMed Central PMCID: PMC6031357.

Investigation of Islet2a function in zebrafish embryos: Mutants and morphants differ in morphologic phenotypes and gene expression. 2018

PLoS One. 2018;13(6):e0199233. doi: 10.1371/journal.pone.0199233. eCollection 2018. PubMed PMID: 29927984; PubMed Central PMCID: PMC6013100.

Elucidating the Role of the Maternal Embryonic Leucine Zipper Kinase in Adrenocortical Carcinoma. Endocrinology. 2018

2018 Jul 1;159(7):2532-2544. doi: 10.1210/en.2018-00310. PubMed PMID: 29790920.

Resistance Mechanisms to Targeted Therapies in ROS1+ and ALK+ Non-small Cell Lung Cancer. 2018

Clin Cancer Res. 2018 Jul 15;24(14):3334-3347. doi: 10.1158/1078-0432.CCR-17-2452. Epub 2018 Apr 10. PubMed PMID: 29636358; PubMed Central PMCID: PMC6050099.

Idiopathic Scoliosis Families Highlight Actin-Based and Microtubule-Based Cellular Projections and Extracellular Matrix in Disease Etiology. 2018

G3 (Bethesda). 2018 Jul 31;8(8):2663-2672. doi: 10.1534/g3.118.200290. PubMed PMID: 29930198; PubMed Central PMCID: PMC6071588.

Intrauterine growth restriction decreases NF-?B signaling in fetal pulmonary artery endothelial cells of fetal sheep. 2018

Am J Physiol Lung Cell Mol Physiol. 2018 Sep 1;315(3):L348-L359. doi: 10.1152/ajplung.00052.2018. Epub 2018 May 3. PubMed PMID: 29722560; PubMed Central PMCID: PMC6172617.

The Jumonji-domain histone demethylase inhibitor JIB-04 deregulates oncogenic programs and increases DNA damage in Ewing Sarcoma, resulting in impaired cell proliferation and survival, and reduced tumor growth. 2018

Oncotarget. 2018 Sep 4;9(69):33110-33123. doi: 10.18632/oncotarget.26011. eCollection 2018 Sep 4. PubMed PMID: 30237855; PubMed Central PMCID: PMC6145692.

Comparison of Molecular Testing Modalities for Detection of ROS1 Rearrangements in a Cohort of Positive Patient Samples. 2018

J Thorac Oncol. 2018 Oct;13(10):1474-1482. doi: 10.1016/j.jtho.2018.05.041. Epub 2018 Jun 20. PubMed PMID: 29935306; PubMed Central PMCID: PMC6286810.

Transcriptome analysis of human heart failure reveals dysregulated cell adhesion in dilated cardiomyopathy and activated immune pathways in ischemic heart failure. 2018

BMC Genomics. 2018 Nov 12;19(1):812. doi: 10.1186/s12864-018-5213-9. PubMed PMID: 30419824; PubMed Central PMCID: PMC6233272.

Distinction of saffron cod (Eleginus gracilis) from several other gadid species by using microsatellite markers. 2017

Fishery Bulletin. 2017; 116:60-68. doi: 10.7755/FB.116.1.6.

4th. Gsg1, Trnp1, and Tmem215 Mark Subpopulations of Bipolar Interneurons in the Mouse Retina. 2017

Invest Ophthalmol Vis Sci. 2017 Feb 1;58(2):1137-1150. doi: 10.1167/iovs.16-19767. PubMed PMID: 28199486; PubMed Central PMCID: PMC5317276.

Islet-Derived CD4 T Cells Targeting Proinsulin in Human Autoimmune Diabetes. 2017

Diabetes. 2017 Mar;66(3):722-734. doi: 10.2337/db16-1025. Epub 2016 Dec 5. PubMed PMID: 27920090; PubMed Central PMCID: PMC5319719.

Systems biology of facial development: contributions of ectoderm and mesenchyme. 2017

Dev Biol. 2017 Jun 1;426(1):97-114. doi: 10.1016/j.ydbio.2017.03.025. Epub 2017 Mar 29. PubMed PMID: 28363736; PubMed Central PMCID: PMC5530582.

MLL2, Not MLL1, Plays a Major Role in Sustaining MLL-Rearranged Acute Myeloid Leukemia. 2017

Cancer Cell. 2017 Jun 12;31(6):755-770.e6. doi: 10.1016/j.ccell.2017.05.002. PubMed PMID: 28609655; PubMed Central PMCID: PMC5598468.

An autonomous metabolic role for Spen. 2017

PLoS Genet. 2017 Jun;13(6):e1006859. doi: 10.1371/journal.pgen.1006859. eCollection 2017 Jun. PubMed PMID: 28640815; PubMed Central PMCID: PMC5501677.

Impaired mitophagy facilitates mitochondrial damage in Danon disease. 2017

J Mol Cell Cardiol. 2017 Jul;108:86-94. doi: 10.1016/j.yjmcc.2017.05.007. Epub 2017 May 16. PubMed PMID: 28526246.

The effects of historical fragmentation on major histocompatibility complex class II ß and microsatellite variation in the Aegean island reptile, Podarcis erhardii. 2017

Ecol Evol. 2017 Jul;7(13):4568-4581. doi: 10.1002/ece3.3022. eCollection 2017 Jul. PubMed PMID: 28690787; PubMed Central PMCID: PMC5496512.

High resolution measurement of DUF1220 domain copy number from whole genome sequence data. 2017

BMC Genomics. 2017 Aug 14;18(1):614. doi: 10.1186/s12864-017-3976-z. PubMed PMID: 28807002; PubMed Central PMCID: PMC5556342.

NF-?B upregulation through epigenetic silencing of LDOC1 drives tumor biology and specific immunophenotype in Group A ependymoma. 2017

Neuro Oncol. 2017 Oct 1;19(10):1350-1360. doi: 10.1093/neuonc/nox061. PubMed PMID: 28510691; PubMed Central PMCID: PMC5596179.

Targeted Genome Sequencing Reveals Varicella-Zoster Virus Open Reading Frame 12 Deletion. 2017

J Virol. 2017 Oct 15;91(20). doi: 10.1128/JVI.01141-17. Print 2017 Oct 15. PubMed PMID: 28747504; PubMed Central PMCID: PMC5625521.

Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. 2017

Microbiome. 2017 Oct 17;5(1):142. doi: 10.1186/s40168-017-0361-8. PubMed PMID: 29041965; PubMed Central PMCID: PMC5645900.

Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication. 2017

Front Microbiol. 2017;8:2084. doi: 10.3389/fmicb.2017.02084. eCollection 2017. PubMed PMID: 29163389; PubMed Central PMCID: PMC5663688.

A method for extracting and characterizing RNA from urine: For downstream PCR and RNAseq analysis. 2017

Anal Biochem. 2017 Nov 1;536:8-15. doi: 10.1016/j.ab.2017.08.003. Epub 2017 Aug 10. PubMed PMID: 28803886; PubMed Central PMCID: PMC6278937.

Novel insights into the clinical phenotype and pathophysiology underlying low VWF levels. 2017

Blood. 2017 Nov 23;130(21):2344-2353. doi: 10.1182/blood-2017-05-786699. Epub 2017 Sep 15. PubMed PMID: 28916584; PubMed Central PMCID: PMC5881608.

p16 Loss and E2F/cell cycle deregulation in infant posterior fossa ependymoma. 2017

Pediatr Blood Cancer. 2017 Dec;64(12). doi: 10.1002/pbc.26656. Epub 2017 May 26. PubMed PMID: 28548702; PubMed Central PMCID: PMC5647247.

Hypertonic saline attenuates the cytokine-induced pro-inflammatory signature in primary human lung epithelia. 2017

PLoS One. 2017;12(12):e0189536. doi: 10.1371/journal.pone.0189536. eCollection 2017. PubMed PMID: 29253007; PubMed Central PMCID: PMC5734749.

Development and characterization of 29 microsatellite markers for Ligumia nasuta (Bivalvia: Unionidae) using an Illumina sequencing approach. 2016

Biochemical Systematics and Ecology. 66:239–242. 2016;

Microsatellite records for volume 8, issue 1. 2016

Conservation genetics resources. 2016; 8:43.

Combined deletion of Xrcc4 and Trp53 in mouse germinal center B cells leads to novel B cell lymphomas with clonal heterogeneity. 2016

J Hematol Oncol. 2016 Jan 7;9:2. doi: 10.1186/s13045-015-0230-5. PubMed PMID: 26740101; PubMed Central PMCID: PMC4704435.

Occupancy of RNA Polymerase II Phosphorylated on Serine 5 (RNAP S5P) and RNAP S2P on Varicella-Zoster Virus Genes 9, 51, and 66 Is Independent of Transcript Abundance and Polymerase Location within the Gene. 2016

J Virol. 2016 Feb 1;90(3):1231-43. doi: 10.1128/JVI.02617-15. Print 2016 Feb 1. PubMed PMID: 26559844; PubMed Central PMCID: PMC4719599.

Autoimmune vitiligo is associated with gain-of-function by a transcriptional regulator that elevates expression of HLA-A*02:01 in vivo. 2016

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):1357-62. doi: 10.1073/pnas.1525001113. Epub 2016 Jan 19. PubMed PMID: 26787886; PubMed Central PMCID: PMC4747738.

Resistome diversity in cattle and the environment decreases during beef production. 2016

Elife. 2016 Mar 8;5:e13195. doi: 10.7554/eLife.13195. PubMed PMID: 26952213; PubMed Central PMCID: PMC4798965.

Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain 2016

Appl Environ Microbiol. 2016 Apr;82(8):2433-2443. doi: 10.1128/AEM.00078-16. Print 2016 Apr. PubMed PMID: 26873315; PubMed Central PMCID: PMC4959480.

Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems. 2016

Sci Rep. 2016 Apr 20;6:24645. doi: 10.1038/srep24645. PubMed PMID: 27095377; PubMed Central PMCID: PMC4837390.

Deficiency of mitochondrial modulator MCJ promotes chemoresistance in breast cancer. 2016

JCI Insight. 2016 May 19;1(7). doi: 10.1172/jci.insight.86873. PubMed PMID: 27275014; PubMed Central PMCID: PMC4888911.

Multi-Institutional FASTQ File Exchange as a Means of Proficiency Testing for Next-Generation Sequencing Bioinformatics and Variant Interpretation. 2016

J Mol Diagn. 2016 Jul;18(4):572-9. doi: 10.1016/j.jmoldx.2016.03.002. Epub 2016 May 4. PubMed PMID: 27155050.

The FaceBase Consortium: a comprehensive resource for craniofacial researchers. 2016

Development. 2016 Jul 15;143(14):2677-88. doi: 10.1242/dev.135434. Epub 2016 Jun 10. PubMed PMID: 27287806; PubMed Central PMCID: PMC4958338.

MEMO1 drives cranial endochondral ossification and palatogenesis. 2016

Dev Biol. 2016 Jul 15;415(2):278-295. doi: 10.1016/j.ydbio.2015.12.024. Epub 2015 Dec 31. PubMed PMID: 26746790; PubMed Central PMCID: PMC4914435.

FLNC Gene Splice Mutations Cause Dilated Cardiomyopathy 2016

JACC Basic Transl Sci. 2016 Aug;1(5):344-359. doi: 10.1016/j.jacbts.2016.05.004. Epub 2016 Jul 27. PubMed PMID: 28008423; PubMed Central PMCID: PMC5166708.

Development of microsatellite markers for buffalograss (Buchloë dactyloides; Poaceae), a drought-tolerant turfgrass alternative. 2016

Appl Plant Sci. 2016 Aug;4(8). doi: 10.3732/apps.1600033. eCollection 2016 Aug. PubMed PMID: 27610277; PubMed Central PMCID: PMC5001859.

Genomewide Association Study of African Children Identifies Association of SCHIP1 and PDE8A with Facial Size and Shape 2016

PLoS Genet. 2016 Aug;12(8):e1006174. doi: 10.1371/journal.pgen.1006174. eCollection 2016 Aug. PubMed PMID: 27560698; PubMed Central PMCID: PMC4999243.

Hypertonic Saline Primes Activation of the p53-p21 Signaling Axis in Human Small Airway Epithelial Cells That Prevents Inflammation Induced by Pro-inflammatory Cytokines. 2016

J Proteome Res. 2016 Oct 7;15(10):3813-3826. doi: 10.1021/acs.jproteome.6b00602. Epub 2016 Aug 29. PubMed PMID: 27529569; PubMed Central PMCID: PMC5811188.

Unexpected effects of different genetic backgrounds on identification of genomic rearrangements via whole-genome next generation sequencing. 2016

BMC Genomics. 2016 Oct 21;17(1):823. doi: 10.1186/s12864-016-3153-9. PubMed PMID: 27769169; PubMed Central PMCID: PMC5075209.

MEGARes: an antimicrobial resistance database for high throughput sequencing. 2016

Nucleic Acids Res. 2017 Jan 4;45(D1):D574-D580. doi: 10.1093/nar/gkw1009. Epub 2016 Nov 28. PubMed PMID: 27899569; PubMed Central PMCID: PMC5210519.

Development and characterization of 30 novel microsatellite markers for Grant’s gazelle (Nanger granti). 2015

Conservation Genetics Resources, DOI:10.1007/s12686-014-0339-9. 2015;

Development of microsatellite markers for globally distributed populations of the threatened silky shark, Carcharhinus falciformis. 2015

Conservation Genetics Resources 7:463-465. 2015;

Development of polymorphic microsatellite markers for the bonnethead shark, Sphyrna tiburo. 2015

Conservation Genetics Resources, DOI :10.1007/s12686-014-0289-2. 2015;

Autophagy Supports Breast Cancer Stem Cell Maintenance by Regulating IL6 Secretion. 2015

Mol Cancer Res. 2015 Apr;13(4):651-8. doi: 10.1158/1541-7786.MCR-14-0487. Epub 2015 Jan 8. PubMed PMID: 25573951; PubMed Central PMCID: PMC4398616.

Germline mutations in ETV6 are associated with thrombocytopenia, red cell macrocytosis and predisposition to lymphoblastic leukemia. 2015

Nat Genet. 2015 May;47(5):535-538. doi: 10.1038/ng.3253. Epub 2015 Mar 25. PubMed PMID: 25807284; PubMed Central PMCID: PMC4631613.

Characterization of microsatellite loci for an Australian epiphytic orchid, Dendrobium calamiforme, using Illumina sequencing. 2015

Appl Plant Sci. 2015 Jun;3(6). doi: 10.3732/apps.1500016. eCollection 2015 Jun. PubMed PMID: 26082878; PubMed Central PMCID: PMC4467759.

Joint MiRNA/mRNA expression profiling reveals changes consistent with development of dysfunctional corpus luteum after weight gain. 2015

PLoS One. 2015;10(8):e0135163. doi: 10.1371/journal.pone.0135163. eCollection 2015. PubMed PMID: 26258540; PubMed Central PMCID: PMC4530955.

High-efficiency reprogramming of fibroblasts into cardiomyocytes requires suppression of pro-fibrotic signalling 2015

Nat Commun. 2015 Sep 10;6:8243. doi: 10.1038/ncomms9243. PubMed PMID: 26354680; PubMed Central PMCID: PMC4579788.

Z chromosome divergence, polymorphism and relative effective population size in a genus of lekking birds. 2015

Heredity (Edinb). 2015 Nov;115(5):452-9. doi: 10.1038/hdy.2015.46. Epub 2015 May 27. PubMed PMID: 26014526; PubMed Central PMCID: PMC4611240.

Development and characterization of 33 novel polymorphic microsatellite markers for the brown tree snake Boiga irregularis. 2015

BMC Res Notes. 2015 Nov 7;8:658. doi: 10.1186/s13104-015-1620-z. PubMed PMID: 26547413; PubMed Central PMCID: PMC4637142.

Role of Titin Missense Variants in Dilated Cardiomyopathy. 2015

J Am Heart Assoc. 2015 Nov 13;4(11). doi: 10.1161/JAHA.115.002645. PubMed PMID: 26567375; PubMed Central PMCID: PMC4845231.

Development and characterization of thirty-three microsatellite markers for the Patagonian sprat, Sprattus fuegensis (Jenyns, 1842), using paired-end Illumina shotgun sequencing. 2014

Conservation Genetics Resources, 6:833-836. 2014;

Development and characterization of twenty-two polymorphic microsatellite markers for the leafcutter ant, Acromyrmex lundii, utilizing Illumina sequencing. 2014

Conservation Genetics Resources, 6:319-322. 2014;

Development and characterization of eighty-four microsatellite markers for the red snapper (Lutjanus campechanus) using Illumina paired-end sequencing. 2014

Aquaculture, http://dx.doi.org/10.1016/j.aquaculture.2014.04.005. 2014;

Development of twenty-one polymorphic microsatellite markers for the fungus-growing ant, Mycocepurus goeldii (Formicidae: Attini), using Illumina paired-end genomic sequencing. 2014

Conservation Genetics Resources, 6:739-741. 2014;

Tallgrass prairie soil fungal communities are resilient to climate change. 2014

Fungal ecology. 2014; 10:44-57.

Development and characterization of twenty-two polymorphic microsatellite markers for the leafcutter ant, Acromyrmex lundii, utilizing Illumina sequencing. 2014

Conservation Genetics Resources, 6:319-322. 2014;

Development of polymorphic microsatellite markers for the Pleuroderma thaul. 2014

Conservation Genetics Resources, 6:747-749. 2014;

Development of polymorphic microsatellite markers for the orange-breasted falcon (Falco deiroleucus). 2014

Conservation Genetics Resources, 6:743-745. 2014;

Comparison of varicella-zoster virus RNA sequences in human neurons and fibroblasts. 2014

J Virol. 2014 May;88(10):5877-80. doi: 10.1128/JVI.00476-14. Epub 2014 Mar 5. PubMed PMID: 24600007; PubMed Central PMCID: PMC4019124.

A unique missense allele of BAF155, a core BAF chromatin remodeling complex protein, causes neural tube closure defects in mice. 2014

Dev Neurobiol. 2014 May;74(5):483-97. doi: 10.1002/dneu.22142. Epub 2014 Jan 9. PubMed PMID: 24170322; PubMed Central PMCID: PMC4670623.

Nitric oxide from IFN?-primed macrophages modulates the antimicrobial activity of ß-lactams against the intracellular pathogens Burkholderia pseudomallei and Nontyphoidal Salmonella. 2014

PLoS Negl Trop Dis. 2014 Aug;8(8):e3079. doi: 10.1371/journal.pntd.0003079. eCollection 2014 Aug. PubMed PMID: 25121731; PubMed Central PMCID: PMC4133387.

Decreased levels of BAG3 in a family with a rare variant and in idiopathic dilated cardiomyopathy. 2014

J Cell Physiol. 2014 Nov;229(11):1697-702. doi: 10.1002/jcp.24615. PubMed PMID: 24623017; PubMed Central PMCID: PMC4296028.

Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate. 2014

Genes Dev. 2014 Dec 1;28(23):2663-76. doi: 10.1101/gad.252106.114. PubMed PMID: 25452276; PubMed Central PMCID: PMC4248296.

Exome sequencing identifies a rare HSPG2 variant associated with familial idiopathic scoliosis. 2014

G3 (Bethesda). 2014 Dec 12;5(2):167-74. doi: 10.1534/g3.114.015669. PubMed PMID: 25504735; PubMed Central PMCID: PMC4321025.

Development and characterization of twenty-three microsatellite markers for the freshwater minnow Santa Ana speckled dace (Rhinichthys osculus spp., Cyprinidae) using paired-end Illumina shotgun sequencing. 2013

Conservation Genetics Resources, 5:145-148. 2013;

Development and characterization of twenty-two novel microsatellite markers for the mountain whitefish, Prosopium williamsoni and cross-amplification in the round whitefish, P. cylindraceum, using paired-end Illumina shotgun sequencing. 2013

Conservation Genetics Resources, 5:89-91. 2013;

Development of polymorphic microsatellite markers for the North American porcupine, Erethizon dorsatum, using paired-end Illumina sequencing. 2013

Conservation Genetics Resources. DOI: 10.1007/s12686-013-9933-5. 2013;

Development and characterization of sixteen microsatellite markers for the federally endangered species: Leptodea leptodon (Bivalvia: Unionidae) using paired-end Illumina shotgun sequencing. 2013

Conservation Genetics Resources, 4:787-789. 2013;

Development of 31 polymorphic microsatellite markers for the mole salamander (Ambystoma talpoideum) using Illumina paired-end sequencing. 2013

Conservation Genetics Resources. DOI: 10.1007/s12686-013-9940-6. 2013;

Isolation and characterization of 18 novel polymorphic microsatellite markers from the Mayan cichlid (Cichlasoma urophthalmus). 2013

Conservation Genetics Resources. DOI:10.1007/s12686-013-9886-8. 2013;

Development of 28 polymorphic microsatellite markers for the endemic Azorean spider Sancus acoreensis (Araneae, Tetragnathidae). 2013

Conservation Genetics Resources. DOI: 10.1007/s12686-013-9976-7. 2013;

Paired-end illumina shotgun sequencing used to develop the first microsatellite primers for Megacopta cribraria (F.) (Hemiptera: Heteroptera: Plataspidae). 2013

Journal of Entomological Science. 48:345-351. 2013;

Development of polymorphic microsatellite markers for the microendemic pupfishes Cyprinodon julimes and C. pachycephalus. 2013

Conservation Genetics Resources. DOI: 10.1007/s12686-013-9925-5. 2013;

Long-term nitrogen amendment alters the diversity and assemblage of soil bacterial communities in tallgrass prairie. 2013

PLoS One. 2013;8(6):e67884. doi: 10.1371/journal.pone.0067884. Print 2013. PubMed PMID: 23840782; PubMed Central PMCID: PMC3695917.

Whole exome sequencing identifies a troponin T mutation hot spot in familial dilated cardiomyopathy. 2013

PLoS One. 2013;8(10):e78104. doi: 10.1371/journal.pone.0078104. eCollection 2013. PubMed PMID: 24205113; PubMed Central PMCID: PMC3812167.

32 species validation of a new Illumina paired-end approach for the development of microsatellites. 2013

PLoS One. 2013;8(11):e81853. doi: 10.1371/journal.pone.0081853. eCollection 2013. PubMed PMID: 24312368; PubMed Central PMCID: PMC3842982.

Protective role of IL-6 in vascular remodeling in Schistosoma pulmonary hypertension. 2013

Am J Respir Cell Mol Biol. 2013 Dec;49(6):951-9. doi: 10.1165/rcmb.2012-0532OC. PubMed PMID: 23815102; PubMed Central PMCID: PMC3931110.

Development of polymorphic microsatellite markers for blue king crab (Paralithodes platypus). 2012

Conservation Genetics Resources, 4:897-899. 2012;

Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake 2012

PLoS One. 2012;7(2):e30953. doi: 10.1371/journal.pone.0030953. Epub 2012 Feb 14. PubMed PMID: 22348032; PubMed Central PMCID: PMC3279355.

Transcriptome analysis and SNP development can resolve population differentiation of Streblospio benedicti, a developmentally dimorphic marine annelid. 2012

PLoS One. 2012;7(2):e31613. doi: 10.1371/journal.pone.0031613. Epub 2012 Feb 16. PubMed PMID: 22359608; PubMed Central PMCID: PMC3281091.

Microsatellite development for an endangered riparian inhabitant, Lilaeopsis schaffneriana subsp. recurva (Apiaceae). 2012

Am J Bot. 2012 Apr;99(4):e164-6. doi: 10.3732/ajb.1100517. Epub 2012 Apr 2. PubMed PMID: 22473981.

Integrating microsatellite and pedigree analyses to facilitate the captive management of the endangered Mississippi sandhill crane (Grus canadensis pulla) 2012

Zoo Biol. 2012 May-Jun;31(3):322-35. doi: 10.1002/zoo.20399. Epub 2011 May 20. PubMed PMID: 21604289.

Development and characterization of microsatellite markers for Berberis thunbergii (Berberidaceae) 2012

Am J Bot. 2012 May;99(5):e220-2. doi: 10.3732/ajb.1100530. Epub 2012 Apr 28. PubMed PMID: 22542902.

Transcriptome analysis of a North American songbird, Melospiza melodia. 2012

DNA Res. 2012;19(4):325-33. doi: 10.1093/dnares/dss015. Epub 2012 May 29. PubMed PMID: 22645122; PubMed Central PMCID: PMC3415294.

Characterization of 42 polymorphic microsatellite loci in Mimulus ringens (Phrymaceae) using Illumina sequencing. 2012

Am J Bot. 2012 Dec;99(12):e477-80. doi: 10.3732/ajb.1200180. Epub 2012 Nov 28. PubMed PMID: 23196400.

Twelve novel microsatellite markers for the marbled salamander, Ambystoma opacum 2011

Conservation Genetics Resources, 3:773-775. 2011;

The effects of perchlorate on thyroidal gene expression are different from the effects of iodide deficiency 2011

J Toxicol Environ Health A. 2011;74(14):917-26. doi: 10.1080/15287394.2011.573740. PubMed PMID: 21623536.

Development and characterization of 12 microsatellite loci for the Dwarf Salamander, Eurycea quadridigitata 2011

Conservation Genetics Resources, 3:633-635. 2011;

Development and characterization of ten polymorphic microsatellite loci in the yellowtail flounder (Limanda ferruginea) 2011

Conservation Genetics Resources, 3:369-371. 2011;

Fourteen novel microsatellite markers for the gopher frog, Lithobates capito (Amphibia: Ranidae) 2011

Conservation Genetics Resources, 4:201-203. 2011;

Geographic distribution of the mid-continent population of sandhill cranes and related management applications. 2011

Wildlife Monograph, 175:1-38. 2011;

Ten novel microsatellite markers for the western mosquitofish Gambusia affinis 2011

Conservation Genetics Resources, 3:361-363. 2011;

EcM fungal community structure, but not diversity, altered in a Pb-contaminated shooting range in a boreal coniferous forest site in Southern Finland 2011

FEMS Microbiol Ecol. 2011 Apr;76(1):121-32. doi: 10.1111/j.1574-6941.2010.01038.x. Epub 2011 Jan 20. PubMed PMID: 21223331.

Normalization and centering of array-based heterologous genome hybridization based on divergent control probes. 2011

BMC Bioinformatics. 2011 May 21;12:183. doi: 10.1186/1471-2105-12-183. PubMed PMID: 21600029; PubMed Central PMCID: PMC3125262.

Development and characterization of microsatellite markers for Polygonum cespitosum (Polygonaceae). 2011

Am J Bot. 2011 Jul;98(7):e180-2. doi: 10.3732/ajb.1100053. Epub 2011 Jun 23. PubMed PMID: 21700804.

Development and characterization of ten microsatellite loci for the eastern spadefoot toad, Scaphiopus holbrookii 2010

Conservation Genetics Resources, 2, 143-145. 2010;

Fifteen microsatellite loci for the decollate snail, Rumina decollata 2010

Conservation Genetics Resources, 2, 287-289. 2010;

Members of soil bacterial communities sensitive to tillage and crop rotation 2010

Soil Biology and Biochemistry. 2010; 42:2111-2118.

Development and characterization of 17 polymorphic microsatellite loci in the faucet snail, Bithynia tentaculata (Gastropoda: Caenogastropoda: Bithyniidae) 2010

Conservation Genetics Resources, 2, 247-250. 2010;

Isolation and characterization of 14 polymorphic microsatellite DNA loci for the endangered Whooping crane (Grus americana) and their applicability to other crane species 2010

Conservation Genetics Resources, 2, 251-254. 2010;

Development and characterization of twelve polymorphic microsatellite loci in the Bog Copper, Lycaena epixanthe 2010

Conservation Genetics Resources, 2, 159-161. 2010;

Novel microsatellite loci for the compost earthworm Eisenia fetida: A genetic comparison of three North American vermiculture stocks 2010

Pedobiologia, 54:111–117. 2010;

Isolation and characterization of 17 polymorphic microsatellite loci in the kangaroo mouse, genus Microdipodops (Rodentia: Heteromyidae). 2010

Conservation Genetics Resources, 2, 139-141. 2010;

Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites 2010

Mol Ecol. 2010 Mar;19 Suppl 1:41-53. doi: 10.1111/j.1365-294X.2009.04483.x. PubMed PMID: 20331769.

Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination 2010

Mol Ecol. 2010 Mar;19 Suppl 1:67-80. doi: 10.1111/j.1365-294X.2009.04485.x. PubMed PMID: 20331771.

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments 2010

New Phytol. 2010 Apr;186(2):496-513. doi: 10.1111/j.1469-8137.2010.03197.x. Epub 2010 Feb 17. PubMed PMID: 20180911.

Five Hundred Microsatellite Loci for Peromyscus 2010

Conserv Genet. 2010 Jun 1;11(3):1243-1246. doi: 10.1007/s10592-009-9941-x. PubMed PMID: 20563244; PubMed Central PMCID: PMC2885811.

Vertical distribution of fungal communities in tallgrass prairie soil 2010

Mycologia. 2010 Sep-Oct;102(5):1027-41. doi: 10.3852/09-316. PubMed PMID: 20943503.

Multi-element fingerprinting and high throughput sequencing identify multiple elements that affect fungal communities in Quercus macrocarpa foliage 2010

Plant Signal Behav. 2010 Sep;5(9):1157-61. doi: 10.4161/psb.5.9.12681. PubMed PMID: 21490423; PubMed Central PMCID: PMC3115093.

Development of polymorphic microsatellite DNA markers from the Korean field mouse, Apodemus peninsulae 2009

Conservation Genetics, 10, 1923-1925. 2009;

Ecological genomics of nematode community interactions: model and non-model approaches 2009

In: Evolutionary Biology: Concept, Modeling, and Application (ed. Pontarotti P), pp. 303-321. Springer-Verlag, Berlin, Heidelberg, Germany.. 2009;

Development and characterization of nineteen polymorphic microsatellite loci from seaside alder, Alnus maritime 2009

Conservation Genetics, 10, 1907-1910. 2009;

Heteroduplex molecules cause sexing errors in a standard molecular protocol for avian sexing 2009

Mol Ecol Resour. 2009 Jan;9(1):61-5. doi: 10.1111/j.1755-0998.2008.02307.x. PubMed PMID: 21564567.

A transgenic strain of the nematode Caenorhabditis elegans as a biomonitor for heavy metal contamination. 2009

Environ Toxicol Chem. 2009 Jun;28(6):1311-8. doi: 10.1897/08-496.1. PubMed PMID: 19175297.

Caenorhabditis elegans genomic response to soil bacteria predicts environment-specific genetic effects on life history traits 2009

PLoS Genet. 2009 Jun;5(6):e1000503. doi: 10.1371/journal.pgen.1000503. Epub 2009 Jun 5. PubMed PMID: 19503598; PubMed Central PMCID: PMC2684633.

Bar-coded pyrosequencing reveals shared bacterial community properties along the temperature gradients of two alkaline hot springs in Yellowstone National Park. 2009

Appl Environ Microbiol. 2009 Jul;75(13):4565-72. doi: 10.1128/AEM.02792-08. Epub 2009 May 8. PubMed PMID: 19429553; PubMed Central PMCID: PMC2704827.

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere 2009

New Phytol. 2009 Oct;184(2):438-48. doi: 10.1111/j.1469-8137.2009.02990.x. Epub 2009 Aug 11. PubMed PMID: 19674337.

Microsatellite loci characterized in three African crane species (Gruidae, Aves) 2008

Mol Ecol Resour. 2009 Jan;9(1):308-11. doi: 10.1111/j.1755-0998.2008.02440.x. Epub 2008 Nov 10. PubMed PMID: 21564635.

Evolutionary relationships among copies of feather beta () keratin genes from several avian orders 2008

Integr Comp Biol. 2008 Oct;48(4):463-75. doi: 10.1093/icb/icn061. Epub 2008 Jul 3. PubMed PMID: 21669807.

Genetic conservation of South African wattled cranes 2006

Biological Conservation, 127, 98-106. 2006;

Development of taxon-specific markers for high-throughput screening of microbial-feeding nematodes. 2006

Molecular Ecology Notes, 6, 712-714. 2006;

Molecular approach for assessing responses of microbial-feeding nematodes to burning and chronic nitrogen enrichment in a native grassland 2006

Mol Ecol. 2006 Aug;15(9):2601-9. doi: 10.1111/j.1365-294X.2006.02971.x. PubMed PMID: 16842430.

Geographical partitioning of microsatellite variation in the sarus crane. 2005

Animal Conservation, 8, 1-8. 2005;

Population genetic structure in migratory sandhill cranes and the role of Pleistocene glaciations 2005

Mol Ecol. 2005

High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae) 2003

Theor Appl Genet. 2003 Nov;107(7):1201-7. doi: 10.1007/s00122-003-1370-5. Epub 2003 Aug 8. PubMed PMID: 12908097.

Refining the whooping crane studbook by incorporating microsatellite DNA and leg-banding analyses 2002

Conservation Biology, 16, 789-799. 2002;

Artificial insemination in captive whooping cranes: results from genetic analyses. 2001

Zoo Biology, 20, 331-342. 2001;

Screening the Gamµ7 microsatellite locus to determine the sex of captive whooping cranes 1999

Promega Notes Online, www.promega.com/enotes/applications/ap0006_tabs.htm. 1999;

Ecological characterization of Opuntia clones in South Texas: Implications for wildlife herbivory and frugivory 1997

Journal of the Professional Association for Cactus Development, 2, 9-19. 1997;

Logistic regression analysis - a tool for neonate management. 1995

In: The AZA Regional Conference Proceedings, pp. 503-507. 1995;

Development and characterization of thirty novel microsatellite markers for the critically endangered Myanmar Roofed Turtle

Batagur trivittata, and cross-amplification in the Painted River Terrapin, B. borneoensis, and the Southern River Terrapin, B. affinis, using paired-end Illumina shotgun sequencing. Conservation Genetics Resources, 5:383-387. 2012;

Kenneth Jones, PhD

Grant Funding